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to a mouse comparative analysis

Of the expanded gene families, the cathepsin cluster on chromosome 13 and cystatins on chromosome 16 are expressed in the placenta202,203 and may affect its development. The correspondence along chromosome 22 (a particularly (G+C)-rich chromosome) is markedly enhanced (r2 increases from 0.55 to 0.75) by this correction (Fig. On the other hand, the speaker is able to backward cast his ee. His prospects appear dear, when basing them on what has happened to him previously. The major satellite was found in about 3.6% of the reads; this is also lower than previous estimates based on density gradient experiments, which found that major satellites comprise about 5.5% of the mouse genome, or approximately 8Mb per chromosome65. (Ej., los anillos en la lengua y la nariz, los tatuajes, los zapatos, de plataforma, etc.) We also examined centromeric sequences, including the euchromatin-proximal major satellite repeat (234 bases) and the telomere-proximal minor repeat (120 bases) found on some chromosomes63,64. The correlation is stronger than can be explained simply by local (G+C) content and points to additional factors influencing how the genome is moulded by transposons. Although the excluded putative genes (163 in mouse and 167 in human) may include some true genes, it seems likely that our earlier estimate of approximately 500 tRNA genes in human is an overestimate. Evol. When the family presents one member in each of the studied organisms, the triangle is labelled in orange. The reason for the smaller number of predicted CpG islands in mouse may relate simply to the smaller fraction of the genome with extremely high (G+C) content99 and its effect on the computer algorithm. The current draft sequence of the mouse genome contains only 400 young, full-length elements; of these only 12 have two intact ORFs. J. Hum. Looking at a finer scale, the two measures tAR and t4D are strongly correlated across the genome (Fig. TWINSCAN predicted an extra 4,558 (3%) new exons not predicted by the evidence-based methods. Nature Genet. Data analysts in weather stations use comparison-based charts, such as Line Charts and Bar Charts, to compare weather patterns across different periods. The mouse B2 is typical among SINEs in having a transfer RNA-derived promoter region. Control and expression of cystatin C by mouse decidual cultures. This is probably a reflection of the WGS shotgun approach used to assemble the genome. Furthermore, the use of high-density SNP maps to identify blocks of ancestral identity among mouse strains and to correlate them with phenotypes may assist in the design of QTL experiments. Few studies exist comparing normal cardiovascular development in mice vs. humans. An example of how the draft genome sequence has already been successfully used is the recent identification of the mouse mutation chocolate in the melanosome protein Rab38 (ref. Mol. 2, 780790 (2001), Bucan, M. & Abel, T. The mouse: genetics meets behaviour. We found that 25% of the 75,000 identified ID elements were located within 50bp of a B1 element of similar orientation, suggesting that perhaps most older ID elements are mislabelled or truncated B4 SINEs. Genome Res. On the basis of the fraction of mouse exons with human counterparts, the percentage of true exons among all predicted exons or the specificity of the initial mouse gene catalogue is estimated to be 93%. Log probability scores (L-scores) for all 50-bp windows are shown below the gene. In general, SSRs in which one strand is a polypurine tract and the other a polypyrimidine tract are much more common and extended in mouse than human. Get Of Mice and Men and To a Mouse: A Comparison from Amazon.com. The line the name comes from, "the best laid schemes of mice and men gang aft agley", summarises one of the principal themes of the book, that everyone needs a dream, but no matter how well planned or thought out that dream is, it can go wrong. Bioinformatics 17, S140S148 (2001), Wiehe, T., Gebauer-Jung, S., Mitchell-Olds, T. & Guigo, R. SGP-1: prediction and validation of homologous genes based on sequence alignments. The you to whom the speaker refers is humankind, non-human animals, and all living things on the planet. Evol. 22). He hallucinates seeing Aunt Clara and a giant, talking rabbit. She tells Lennie about her dreams of stardom. Together, the MGSC and these programmes have so far yielded clone-based draft sequence consisting of 1,859Mb (74%, although there is redundancy) and finished sequence of 477Mb (19%) of the mouse genome. The total fraction of the human genome derived from transposons may be considerably larger, but it is not possible to recognize fossils older than a certain age because of the high degree of sequence divergence. Using three-dimensional electron microscopy, Loomba et al. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate. Because many of these classes also seem to have given rise to many pseudogenes, we conservatively considered only those loci that are identical or that are highly similar to RNAs that have been published as true genes. In the third line, he tells the mouse that it does not have to fear him. Science 288, 136140 (2000), Pennacchio, L. A. More than 1,000 spontaneously arising and radiation-induced mouse mutants causing heritable mendelian phenotypes are catalogued in the Mouse Genome Informatics (MGI) database (http://www.informatics.jax.org). Science 228, 953958 (1985), Mouchiroud, D. et al. 17, 262272 (2001), Taver, S. Some probabilistic and statistical problems on the analysis of DNA sequences. Curley's flirtatious wife shows up looking for Curley. Cell Genet. volume420,pages 520562 (2002)Cite this article. If we simulate the events in the mouse lineage by adjusting the ancestral repeats in the human genome for the higher substitution levels that would have occurred in the mouse genome, the proportion of the genome that would still be recognizable as ancestral repeats falls to only 6%. Med. Over 80 pages of materials and over 30 PowerPoi 10 Products $ 13.99 $ 22.92 Save $ 8.93 Bethesda, MD 20894, Web Policies The lower gene count was based on the observed and predicted gene counts, statistically adjusted for systematic under- and overcounting. PMID: 25409826.Topologically associating domains are stable units of replication-timing regulation. Natl Acad. First, known protein-coding cDNAs are mapped onto the genome. These include mutations in the cystic fibrosis transmembrane conductance regulator gene and the -synuclein gene, which is associated with a familial form of Parkinson's disease191. The absence of homology between sex chromosomes in marsupials strongly influences their behaviour during male meiosis. We compared the overall distribution Sgenome of conservation scores for the genome to the neutral distribution Sneutral of conservation scores for ancestral repeats (Fig. The cyan bars represent sequence coverage in each of the two genomes for the regions. Thus, some small syntenic segments have probably been omittedthis issue will be addressed best when finished sequences of the two genomes are completed. To make the catalogue as comprehensive as possible, a given region in one genome was allowed to align to multiple, possibly non-syntenically conserved regions in the other genome. In all such cases, they cannot come up with the expected content and rush to essay writing help. In all of these cases, it was clear that genome sequence information could markedly accelerate progress. A. We required that at least 50bp be aligned in each window. The fact that so many of the 25 clusters are related to reproduction is unlikely to be coincidental. We report that the EGFR gene spans nearly 200 kb and that the full-length 170-kDa EGFR is encoded by 28 exons. The poem goes on to paint a picture of the nature of human life and non-human life. We detected 558,000 highly conserved, reciprocally unique landmarks within the mouse and human genomes, which can be joined into conserved syntenic segments and blocks (defined in text). The fifth exon in the mouse gene (green) is interrupted by an intron in the human homologue. Comparative proteomics uncovered a profibrotic and inflammatory phenotype in human and mouse obstructed kidneys . The strategy has four components: (1) production of a BAC-based physical map of the mouse genome by fingerprinting and sequencing the ends of clones of a BAC library44; (2) WGS sequencing to approximately sevenfold coverage and assembly to generate an initial draft genome sequence; (3) hierarchical shotgun sequencing of BAC clones covering the mouse genome combined with the WGS data to create a hybrid WGS-BAC assembly; and (4) production of a finished sequence by using the BAC clones as a template for directed finishing. 10, 547548 (2000), Burge, C. & Karlin, S. Prediction of complete gene structures in human genomic DNA. 30 and Table 17). Evol. 11, 15311535 (2001), Kidwell, M. G. Horizontal transfer. Sci. The mouse has long been used to gain insights into gene function, disease, and drug development. In the analyses below, we use a divergence time for the human and mouse lineages of 75Myr for the purpose of calculating evolutionary rates, although it is possible that the actual time may be as recent as 65Myr. Curr. 2022 Oct 27;23(21):13064. doi: 10.3390/ijms232113064. 2, 769779 (2001), Yu, Y. Nucleic Acids Res. One of the most notable features about repeat elements is the contrast in the genomic distribution of LINEs and SINEs. Whatever happens to Lennie is over. Genome Res. Before jumping right into the how-to guide, well address the following question: what is comparative analysis? Gene 174, 95102 (1996), Saccone, S., Pavlicek, A., Federico, C., Paces, J. Chem. In both species, there is a strong increase in SINE density and a decrease in L1 density with increasing (G+C) content, with the latter particularly marked in the mouse. ad, Comparisons with coding exons (blue) and introns (green) (a), 5 UTR (blue) and 3 UTR (green) (b), 200-bp upstream of transcription start (blue) and 200bp downstream of transcription end (green) (c), and CpG islands (blue) and known regulatory regions (green) (d) are shown. d, The relationship of LINE1 density in human and mouse orthologous regions is not linear, reflecting the more extreme bias of LINE1 for (A+T)-rich DNA in mouse. Mol. Microbiol., Washington DC, 1995), Crick, F. H. Codonanticodon pairing: the wobble hypothesis. a, The genome-wide density of conservation scores, Sgenome (dark blue), was decomposed into a mixture of two component densities: Sneutral (red) and Sselected (light blue and grey). Skip to main content Original Article Published: 14 November 2022 A Comparative Systematic Analysis of The Influence of Microplastics on Colon Cells, Mouse and Colon Organoids Sung Bum Park, Won Hoon Jung, Kyoung Jin Choi, Byumseok Koh & Ki Young Kim Tissue Engineering and Regenerative Medicine 20 , 49-58 ( 2023) Cite this article 179 Accesses Genome Res. The estimated gene count would then be about 27,000 with 8.3 exons per gene or about 25,000 with 9 exons per gene. Cell 87, 917927 (1996), Hughes, J. F. & Coffin, J. M. Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution. 20, 853885 (2002), Yeager, M. & Hughes, A. L. Evolution of the mammalian MHC: natural selection, recombination, and convergent evolution. Cell Res. In Victorian England, fancy mice were prized and traded, and a National Mouse Club was founded in 1895 (refs 28, 29). Sci. 278, 167181 (1998), Dermitzakis, E. & Clark, A. Evolution of transcription factor binding sites in mammalian gene regulatory regions: conservation and turnover. 28, 4548 (2000), Polymeropoulos, M. H. et al. End3 mouse brain endothelial cell line) and rat BMSCs (Purchased from Shanghai Zhong Qiao Xin Zhou Biotechnology Co., Ltd) were cultured in Dulbecco's modified Eagle's medium (DMEM) . Furthermore, the ability to perform directed mutagenesis of the mouse germ line through homologous recombination made it possible to manipulate any gene given its DNA sequence, placing an increasing premium on sequence information. Accordingly, orthology need not be a 1:1 relationship and can sometimes be difficult to discern from paralogy (see protein section below concerning lineage-specific gene family expansion). 374, 5356 (1995), Simon, A. M., Veyssiere, G. & Jean, C. Structure and sequence of a mouse gene encoding an androgen-regulated protein: a new member of the seminal vesicle secretory protein family. This observation is consistent with recent reports, including our initial analysis of the human genome1, that the mutation rate is about twofold lower in female meiosis than male meiosis. Proc. 11, 535546 (2002), Zhang, X. "To a Mouse" features Burns's characteristic use of Scottish dialect and a six-line stanza form known as the habbie or Burns stanza. Genet. Science 293, 104111 (2001), DeSilva, U. et al. Press, New York, 1995), Bromham, L., Phillips, M. J. Genome analysis has been enhanced by a number of recent developments. Nucleic Acids Res. It would also imply a net loss of about 400Mb in the mouse lineage, despite the probable addition of about 900Mb of lineage-specific repeat sequences, an estimate about 10% higher than that given by the RepeatMasker program to allow for incomplete sensitivity in the more rapidly changing mouse genome. 8, 14991504 (1980), Larsen, F., Gundersen, G., Lopez, R. & Prydz, H. CpG islands as gene markers in the human genome. The analysis revealed a list of genes expressed under soil growth conditions and a different set of genes encoding proteins which may be important for survival, replication, and . The Ensembl genome database project. Proc. Particularly in the words wins and was which would not traditional be contracted. Nucleic Acids Res. Such differences have been noted in biochemical studies78,79,80,81 and in comparative analyses of fourfold degenerate sites in codons of mouse and human genes82,83,84,85, but the availability of nearly complete genome sequences provides the first detailed picture of the phenomenon. Google Scholar, Ewing, B. The reason for the greater density of SSRs in mouse is unknown. Mol. If you encounter an assignment that fails to provide a frame of reference, you must come up with one on your own. The laboratory mouse occupies a central place in this vision, both as a prototype for all mammalian biology and as a well-characterized organism for modelling human disease states15,16,123. FEBS Lett. High-density SNP mapping to identify loss of heterozygosity288,289, combined with comparative genomic hybridization using cDNA or BAC arrays290,291, can be used to identify chromosomal segments showing loss or gain of copy number in particular tumour types. The predicted transcripts are then aggregated into predicted genes on the basis of sequence overlaps (see Supplementary Information). The activity of transposable elements in the mouse lineage has been quite uniform compared with the human lineage, where an overall decline was interrupted temporarily by a burst of Alu activity. & Lander, E. S. Human and mouse gene structure: comparative analysis and application to exon prediction. Acta 1482, 229240 (2000), Miyawaki, A., Matsushita, F., Ryo, Y. 101, 20422053 (1998), Saitou, N. & Nei, M. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Sci. & Park, C. H. The multiple murine 3 beta-hydroxysteroid dehydrogenase isoforms: structure, function, and tissue- and developmentally specific expression. An international group of researchers gained insights into how similarities and differences between mice and people arise from their genomes. 2014 Nov 20;515(7527):402-5. doi: 10.1038/nature13986. 160, 479485 (1986), Mouchiroud, D., Fichant, G. & Bernardi, G. Compositional compartmentalization and gene composition in the genome of vertebrates. Lamana A, Marazuela M, Gonzlez-Alvaro I, et al. & Eichler, E. E. Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis. Out of 2,605 genetic markers that were unambiguously mapped to the sequence assembly (BLAST match using 10-100 or better as an E-value to a single location) we found 1.8% in which the chromosomal assignment in the genetic map conflicted with that in the sequence. Over time, pseudogenes of either class tend to accumulate mutations that clearly reveal them to be inactive, such as multiple frameshifts or stop codons. A. Comparing performance relative to the competition. Nature 420, 520562 (2002). Biol. Development. But it lacks ready-to-go graphs for conducting a comparative analysis, such as Radar Chart. This is followed by evolutionary analysis of selection and mutation in the mouse and human lineages, as well as polymorphism among current mouse strains. Domain families with enzymatic activity were found to have a lower KA/KS ratio than non-enzymatic domains (Fig. CNS myelin and sertoli cell tight junction strands are absent in Osp/claudin-11 null mice. Besides, you risk losing your market to the competition. Within the MHC complex, the class I genes are the most divergent, having arisen after the rodenthuman divergence227. Note the weak correspondence between predicted exons and blocks of high-scoring whole-genome alignment. b, Similar to a, but with t*AR and t*4D, the normalized rates obtained taking residuals of tAR and t4D from the quadratic functions of (G+C) content shown in Fig. The second-order (quadratic) polynomial regression curve is shown in red. Distinguishing regulatory DNA from neutral sites. We return below to the issue of expansion of gene families. This may contribute a small amount (12%) to the difference in genome size noted above. The WGS assembly described here involved only random reads, without any additional map-based information. Consistent with this analysis, the alignable portion of the genomes contains a vast number of ancestral repeats, primarily relics of transposons that were present in the genome of our common ancestor with mouse and most of which are non-functional. When local (G+C) content is measured in 20-kb windows across the genome, the human genome has about 1.4% of the windows with (G+C) content >56% and 1.3% with (G+C) content <33%. Proc Natl Acad Sci U S A. Nature 317, 819822 (1985), Lawrence, C., McDonnell, D. & Ramsey, W. Analysis of repetitive sequence elements containing tRNA-like sequences. But no matter which organizational scheme you choose, you need not give equal time to similarities and differences. Q. Rev. A YAC-based physical map of the mouse genome. The results of the SLAM analysis can be viewed at http://bio.math.berkeley.edu/slam/mouse/. This gene family is moderately but significantly expanded in mouse (84 genes) relative to human (63 genes). 10, 950958 (2000), Ogata, H., Fujibuchi, W. & Kanehisa, M. The size differences among mammalian introns are due to the accumulation of small deletions. About 558,000 orthologous landmarks were identified; in the mouse assembly, these sequences have a mean spacing of about 4.4kb and an N50 length of about 500bp. We examined the relationship between our measures of genome-wide divergence and recombination rate using recently reported high-resolution measurements of recombination rates in the human genome269. USA 95, 94079412 (1998), Rossant, J. All argumentative papers require you to link each point in the argument back to the thesis. Excel is one of the freemium tools you can use to visualize your data for insights. The development of improved random mutagenesis protocols led to the establishment of large-scale screens to identify interesting new mutants, increasing the need for more rapid positional cloning strategies. Along with Candy they are saving money for their own home, and nearly have enough to move in, but when George shoots Lennie their dream is over, and their plans have all came to nothing, just as the mouse's did. A syntenic block in turn is one or more syntenic segments that are all adjacent on the same chromosome in human and on the same chromosome in mouse, but which may otherwise be shuffled with respect to order and orientation. Natl Acad. PubMed Cell Genet. Genomics 70, 396406 (2000), Zhao, J., Hyman, L. & Moore, C. Formation of mRNA 3 ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis. 275, 3331433320 (2000), Peters, J. Nonspecific esterases of Mus musculus. Comparative analysis is a method that is widely used in social science. Genome Res. Comparative genomic sequence analysis of the human chromosome 21 down syndrome critical region. All the tools of the social scientist, including historical analysis, fieldwork, surveys, and aggregate data analysis, can be used to achieve the goals of comparative research. In contrast, non-genic tRNA-related sequences (those labelled as pseudogenes by tRNAscan-SE or as SINEs by RepeatMasker) differ by an average of 38% and none is within 5% divergence. The L1 5-untranslated regions (UTRs) in both lineages have been even more variable, occasionally through acquisition of entirely new sequences111. d, Conservation near the 3 splice site. Comparative analysis of EV isolation procedures for miRNAs detection in . Genome Res. Sci. The ultracontigs include spanned gaps, whose lengths are estimated on the basis of paired-end reads and alignment against the human sequence (see below). The researchers found that, at a general level, gene regulation and other systems important to mammalian biology have many similarities between mice and humans. 195, 477486 (1991), Tegoni, M. et al. The regional nucleotide substitution rate in fourfold degenerate sites, t4D, was calculated similarly from an average of about 3,700 fourfold degenerate sites per window. At the halfway point of this piece, the speaker turns to address the housie in which the mouse lives. An important issue in annotating mammalian genomes is distinguishing real genes from pseudogenes, that is, inactive gene copies. The large copy number and ubiquitous distribution of ancestral repeats overcome issues of local variation in substitution rates (see below). The properties of the alignments are shown in Table 16 and the distribution of conservation scores relative to neutral substitution is shown in Fig. Endogenous retroviruses fall into three classes (IIII), which show a markedly dissimilar evolutionary history in human and mouse (see Fig. As a specific example of the use of the draft sequence for oncogene discovery, several groups recently used retroviral infection in mice to recover new cancer susceptibility loci. Genome Res. Eur. To avoid complications from the tendency of some repeats, such as Alus, to be selectively removed from some regions of the genome1, we used one family of repeats, the LTRs, to monitor the relative frequency of insertion and retention. Evol. Weve put together a list of comparison-based charts and graphs youve to try. Evaluating emerging opportunities versus risks among micro and small. These gene predictions were missed by the evidence-based methods because they were below various thresholds. Distribution of olfactory receptor genes in the human genome. However, it is recognized that such maps might still miss regions owing to insufficient marker density. Branches with significant nodes (bootstrapping value >0.7) are in black, with the remainder in blue. 2012 Aug;9(4):045002. doi: 10.1088/1478-3975/9/4/045002. Science 296, 916919 (2002), The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I & II Team. To test the accuracy of the ultracontig lengths, we compared the actual length of 675 finished mouse BAC sequences (from the B6 strain) with the corresponding estimated length from the draft genome sequence. 17, 616628 (2000), Ohshima, K., Hamada, M., Terai, Y. J. Biol. These methods tended to have significant overlap with the above-generated gene catalogues, but each tended to introduce significant numbers of predictions that were unsupported by other methods and that appeared to be false positives. In the second stanza, the poet begins apologizing to the mouse for the nature of humankind. b, Box plot of KA/KS values for different locally duplicated, paralogous mouse-specific gene clusters. Well recommend the proven add-in to install to access ready-made graphs for comparative analysis. We return below to the issue of estimating the mammalian gene count. What makes a study comparative is not the particular techniques employed but the theoretical orientation and the sources of data. He goes on to describe the winds which destroyed the mouses labored over home and how it is now without shelter for the winter. 2, 100109 (2001), Oeltjen, J. C. et al. Automated DNA sequencing of the human HPRT locus. Natl Acad. Nature 418, 743750 (2002), Mural, R. J. et al. One possible explanation is local (G+C) content, but previous studies disagree on whether it correlates strongly with divergence92,255,262,263. Both curves are bell-shaped, with a mean of zero, but the standard deviations are higher than would be expected if the sites in each window were independent and conserved with (locally estimated) probability , . Dev. Fewer substitutions are thus tolerated in catalytic regions, suggesting that a larger proportion of amino acids contribute to substrate binding, specificity and catalysis in enzymes. The mouse genome information has also been integrated into existing human genome browsers at these same organizations. Methyl-CpG is mutated by deamination to TpG, leading to approximately fivefold under-representation of CpG across the human1,95 and mouse genomes. Physiol. Below, we obtain an estimate of a combined rate of 0.460.47 substitutions per site, on the basis of an analysis that counts only substitutions since the divergence of the species (see Supplementary Information concerning the methods used). Indeed, the three active subfamilies in mouse, which are otherwise >97% identical, have unrelated or highly diverged 5 ends112,113,114. Nature Med. We suggested a range of 30,00040,000 to allow for additional genes. Indeed, 5.9 million of the 33.6 million passing reads were not part of anchored sequence, with 88% of these not assembled into sequence contigs and 12% assembled into small contigs but not chromosomally localized. The peak at position -3 corresponds to a purine in the Kozak consensus sequence. The mouse sequence was identical to the normal human sequence for 90.3% of these positions, and it differed from both the normal and disease-associated sequence in human for 7.5% of the positions. We find that tAR and t4D vary with local (G+C) content, although the dependence is nonlinear262,264 and is better fitted by regression with a quadratic curve263 (Fig. The genome also encodes many RNAs that do not encode proteins, including abundant RNAs involved in mRNA processing and translation (such as ribosomal RNAs and tRNAs), and more recently discovered RNAs involved in the regulation of gene expression and other functions (such as micro RNAs)165,166. The mob arrives. The new map reveals many more conserved syntenic segments (342 compared with 202) but only slightly more conserved syntenic blocks (217 compared with 170). Only windows with at least 800 aligned fourfold degenerate sites and 800 aligned ancestral repeat sites are shown. The sequence reads, together with the pairing information, were used as input for two recently developed sequence-assembly programs, Arachne56,57 and Phusion58. Data from additional species will probably be needed to address these issues. It also became possible for the first time to begin dissecting polygenic traits by genetic mapping of quantitative trait loci (QTL) for such traits. As a girl raised in the faded glory of the Old South, amid mystical tales of magnolias and moonlight, the mother remains part of a dying generation. U.S. Department of Health & Human Services, NIH Institute and Center Contact Information. The tragedy of this story is that all of them do. A full and detailed description of the methods underlying these studies is provided as Supplementary Information. Let's say you're writing a paper on global food distribution, and you've chosen to compare apples and oranges. Mouse and human thus show similar degrees of homogeneity in the distribution of genes, despite the overall differences in (G+C) content. 18 in the IHGC human genome paper1. Full descriptions are found in Table 15. Mol. Epub 2022 Oct 21. Genet. & Aquadro, C. F. Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 335, 167170 (1988), Yang, Z. Biol. The 12,845 orthologous gene pairs referred to in Table 12 were used for analysis. The poster included with this issue provides a high-level view of the mouse genome, showing such features as genes and gene predictions, repetitive sequence content, (G+C) content, synteny with the human genome, and mouse QTLs. The assembly quality may be due to several factors, including the use of high-quality libraries, the variety of insert lengths in multiple libraries, the improved assembly algorithms, and the inbred nature of the mouse strain (in contrast to the polymorphisms in the human genome sequences).

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to a mouse comparative analysis